This can be done with the Views module. Views provides a default view to emulate Drupal core's handling of taxonomy/term -- it is called taxonomy_term and can be enabled by visiting admin/build/views.
After enabling, the only change you have to make is to add a filter that excludes your particular content type.
I have a content type where users select a taxonomy term. However, I
don't want that content type appearing for the taxonomy listings on
pages like /taxonomy/term/123.
Is there a simple way to do this? The "published to front page" option
doesn't seem to affect taxonomy listings. I could play around with URL
based php conditionals in the content template but I don't really want
to start going down that road.
Regards
Neil
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