[development] Move all core modules into their own directories.

[Morbus Iff]

> Benton:~/dev/drupal-stable/modules adrian$ grep "function theme_*" * | wc
>       63     256    3959
> 
> 50 theme files for a module would be wrong. The most is the comment module.

That's core only. Granted, I just argued a bit ago about "new features 
should only be thought about in regards to core", but /me whines. <g>

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