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I also have had this issue and been searching for the answer (on drupal.org and beyond) for *years* since the users are not phantom users. Apparently, when I moved from Scoop some weird db anomalies surfaced in the uid fields. Thank to Tim, I have finally found a workaround.
The only issue I found that is perhaps related is this one:
Is this the bug you refer to?
Thanks, Brady
Karthik wrote:
Editing the affected nodes via PHPMyAdmin and setting the UID to 1 has restored access again.
This is on the latest 4.6.5.
Has anyone else found this?
This is a known issue. Please search and use the issue queue [ http://drupal.org/project/issues/drupal ] for reporting bugs, requesting features etc.
Thanks :) -K